PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_58F3F93CA.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 241aa    MW: 27097.9 Da    PI: 8.4663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_58F3F93CA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-16140230199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f k +++s+v +  +l lp +f++++  k  ++ t+tl de+ +++e k+    ++++  l++GW +F+ ++ +++gD+ vF+l++ +
  Traes_4DL_58F3F93CA.1 140 FMKRMLHSHVVRGFWLGLPSHFCDTYLPK--NDCTITLVDEKDEEFESKY--LAYKKG--LSGGWAGFALDHVIRDGDSTVFQLIKPT 221
                            8999********************99533..4459***************..555555..9***********************9867 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v+++r+
  Traes_4DL_58F3F93CA.1 222 TF--KVHIIRA 230
                            77..9999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-19131230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-22133229IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-25138229No hitNo description
SMARTSM010193.7E-16140231IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321140231IPR003340B3 DNA binding domain
PfamPF023625.5E-15140230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAIEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAP KTPSPMKHKR RRIIEAATPV  60
PSPPRRSRRL AHIPEVKYAD ACAEVGEDSE RVGRWSPRRR SGSIYLAGGG GGPISMKARM  120
EAASKAEELE SQLDPEFPSF MKRMLHSHVV RGFWLGLPSH FCDTYLPKND CTITLVDEKD  180
EEFESKYLAY KKGLSGGWAG FALDHVIRDG DSTVFQLIKP TTFKVHIIRA AVGDDDNEEM  240
E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14852KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2498040.0AK249804.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54k19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229077.11e-128PREDICTED: B3 domain-containing protein Os03g0184500-like
SwissprotQ10QS91e-123Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLW5EHS71e-180W5EHS7_WHEAT; Uncharacterized protein
STRINGMLOC_71395.21e-163(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-47B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]